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Microscopy Image Analysis Course

Microscopy Image Analysis Course

Start Date:
Sep 19, 2019
Finish date:
Sep 20, 2019
Booking deadline:
Aug 11, 2019
Last Revised:
Jul 31, 2019
Code:
2019-microscopy
Hits:
872
Favoured:
0 Favoure
Price:
40.00 EUR pro Platz
Location:
IPMB, Heidelberg University
Group:
User
Level:
Beginners
Available seats:
40 of 40
Tutor:

Description

Dates:

September 19-20, 2019

Time:

- September 19: 10:00-18:00

- September 20: 9:00-17:00

Venue:

Heidelberg University, IPMB (Institute of Pharmacy and Molecular Biotechnology), Im Neuenheimer Feld 364

 

Course Description:

The course gives an introduction into the field of microscopy image analysis for cell biology and the use of software tools for automated processing of image data. Basic methods for the computer-based analysis of microscopy images are introduced such as image preprocessing, segmentation, feature extraction, classification, colocalization, and tracking. Concepts of software platforms with a focus on ImageJ and their use for analyzing cell microscopy image data are also taught. Workflow systems for automating image analysis pipelines are also considered (e.g., KNIME, Galaxy). The course consists of lectures and practical sessions. Participants should bring their laptops for practical sessions. The target group is researchers with a background in biology or medicine that need to analyze their data and have little or no experience in automated image analysis.

 

Learning goals:

- Introduction to cell microscopy image analysis

- Application of software tools for automated analysis of image data

 

Prerequisites:

Basic knowledge in using software tools for image analysis is helpful but not mandatory.

 

Course fee:

Participants will be charged with a course fee of 40 Euros (to cover lunch and infrastructure-related costs). The invoice details will be shared via email.

 

Registration:

Please register directly on the HD-HuB website: https://www.hd-hub.de/course-dates

In the "Comments" section of the registration form, please provide some information about yourself and your motivation to attend the training (e.g. Position, Field of study/Background, Topic of work, Knowledge of image analysis methods/tools).

 

Registration closes on August 11, 2019. 

The capacity is limited to 20 participants and applicants will be selected after registration is closed. You will be notified of the outcome by e-mail on August 23, 2019.

 

Contact:

PD Dr. Karl Rohr


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